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Course Outline
Introduction to the Python programming language
- Why Python?
- Using Python to manage biological data
- Working with the iPython shell
- Your first program
- Writing Python scripts
- Importing modules
Working with protein and RNA/DNA sequences
- Finding motifs
- In silico transcription and translation
- Handling sequence alignments
Parsing data in various biological formats
- Parsing FASTA
- Data format conversions
Running biological analyses
- BLAST
- Accessing biological web services
Managing biological 3D structures using Python
Python facilitates statistical analysis
Data visualization
- Creating bar and scatter plots
- Calculating Area Under Curve (AUC)
Working with .xls and .csv files
- Importing data from and exporting to MS Excel / OpenOffice Calc
- Writing .xls and .csv files
Using Python to create an automated data processing pipeline
Requirements
Basic biological knowledge regarding protein, RNA, and DNA sequences.
28 Hours
Testimonials (1)
The accesibilit of the trainer and the ability to communicate very effective,